RNAJunction Database - Junction Profile:9399
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 9399: 1YKV_j2_B-G211_B-C228

Primary Citation: (from PDB entry 1YKV)

A.SERGANOV S.KEIPER L.MALININA V.TERESHKO E.SKRIPKIN C.HOBARTNER A.POLONSKAIA A.T.PHAN R.WOMBACHER R.MICURA Z.DAUTER A.JASCHKE D.J.PATEL STRUCTURAL BASIS FOR DIELS-ALDER RIBOZYME-CATALYZED CARBON-CARBON BOND FORMATION. NAT.STRUCT.MOL.BIOL. V. 12 218 2005

Experimental Method: X-RAY_DIFFRACTION

Structure Images
3d structure of junction secondary structure of junction

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Derived Information
Type:Bulge LoopCluster:1YKV j2 B-G211 B-C228 
NC-IUBMB Classification:HS5HS6Cluster Page
Angles: 160°
Fit Criteria: A
Extracted Structure:Download
Minimized Structure:Download RMSD = 0.72925Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain B: AGCAAUACUCGG 12nt

Strand 2: Chain B: CCGUGCCAGCU 11nt

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