Developed by Dr. Bruce Shapiro and Staff
A database of RNA structural elements including junctions, kissing loops, and bulges.
Multi-stranded molecule drawing web server and download links.
Multi-strand RNA secondary structure prediction, as well as RNA sequence design.
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Single sequence RNA secondary structure prediction, including pseudoknots.
RNA secondary structure prediction from a sequence alignment. It uses compensatory base change information as well as energetic considerations to compute a structure. This algorithm is capable of predicting pseudoknots.
Detects correlated mutations in RNA and DNA sequence alignments. It generates what we call a "3D sequence logo." This is an extension of the "sequence logo" concept.