RNAJunction Database - Junction Profile:8942
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 8942: 1YIJ_j6_0-U2115_0-U2276_0-U2290_0-C2315_0-G2421_0-G2459

Primary Citation: (from PDB entry 1YIJ)

D.TU G.BLAHA P.B.MOORE T.A.STEITZ STRUCTURES OF MLSBK ANTIBIOTICS BOUND TO THE MUTATED LARGE RIBOSOMAL SUBUNITS PROVIDE A STRUCTURAL EXPLANATION FOR RESISTANCE CELL V. 121 257 2005

Experimental Method: X-RAY_DIFFRACTION

Structure Images
3d structure of junction secondary structure of junction

Click to launch 3D viewer Jmol | Larger 3D image | Created with Raster3D and RNAView

Derived Information
Type:6-wayCluster:1YIJ j6 0-U2115 0-U2276 0-U2290 0-C2315 0-G2421 0-G2459 
NC-IUBMB Classification:Cluster Page
Angles: 5:31:32:37:38:64:108:139:140:144:149:152:154:170:173°
Fit Criteria: C
Extracted Structure:Download
Minimized Structure:Download RMSD = 0.82543Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain 0: GUUUGAC 7nt

Strand 2: Chain 0: CUUUAC 6nt

Strand 3: Chain 0: GUACGC 6nt

Strand 4: Chain 0: GCGCCC 6nt

Strand 5: Chain 0: GGUCUAGCGAACCA 14nt

Strand 6: Chain 0: UGAUGACAGAAAAG 14nt

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