RNAJunction Database - Junction Profile:5673
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 5673: 1S1I_j6_3-U2115_3-U2276_3-U2290_3-C2315_3-G2421_3-G2459

Primary Citation: (from PDB entry 1S1I)

C.M.SPAHN M.G.GOMEZ-LORENZO R.A.GRASSUCCI R.JORGENSEN G.R.ANDERSEN R.BECKMANN P.A.PENCZEK J.P.G.BALLESTA J.FRANK DOMAIN MOVEMENTS OF ELONGATION FACTOR EEF2 AND THE EUKARYOTIC 80S RIBOSOME FACILITATE TRNA TRANSLOCATION. EMBO J. V. 23 1008 2004

Experimental Method: ELECTRON_MICROSCOPY

Structure Images
3d structure of junction secondary structure of junction

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Derived Information
Type:6-wayCluster:1YIJ j6 0-U2115 0-U2276 0-U2290 0-C2315 0-G2421 0-G2459 
NC-IUBMB Classification:Cluster Page
Angles: 5:29:31:35:36:59:110:139:140:145:153:155:157:168:172°
Fit Criteria: C
Extracted Structure:Download
Minimized Structure:Download RMSD = 1.01857Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain 3: GUUUGAC 7nt

Strand 2: Chain 3: CUUUAC 6nt

Strand 3: Chain 3: GUACGC 6nt

Strand 4: Chain 3: GCGCCC 6nt

Strand 5: Chain 3: GGUCUAGCGAACCA 14nt

Strand 6: Chain 3: UGAUGACAGAAAAG 14nt

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