RNAJunction Database - Junction Profile:5340
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 5340: 1QVF_j6_0-U2115_0-U2276_0-U2290_0-C2315_0-G2421_0-G2459

Primary Citation: (from PDB entry 1QVF)

T.M.SCHMEING P.B.MOORE T.A.STEITZ STRUCTURES OF DEACYLATED TRNA MIMICS BOUND TO THE E SITE OF THE LARGE RIBOSOMAL SUBUNIT RNA V. 9 1345 2003

Experimental Method: X-RAY_DIFFRACTION

Structure Images
3d structure of junction secondary structure of junction

Click to launch 3D viewer Jmol | Larger 3D image | Created with Raster3D and RNAView

Derived Information
Type:6-wayCluster:1YIJ j6 0-U2115 0-U2276 0-U2290 0-C2315 0-G2421 0-G2459 
NC-IUBMB Classification:Cluster Page
Angles: 6:32:32:37:37:64:108:140:140:144:150:150:155:172:173°
Fit Criteria: C
Extracted Structure:Download
Minimized Structure:Download RMSD = 0.79284Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain 0: GUUUGAC 7nt

Strand 2: Chain 0: CUUUAC 6nt

Strand 3: Chain 0: GUACGC 6nt

Strand 4: Chain 0: GCGCCC 6nt

Strand 5: Chain 0: GGUCUAGCGAACCA 14nt

Strand 6: Chain 0: UGAUGACAGAAAAG 14nt

Valid XHTML 1.0 Transitional