RNAJunction Database - Junction Profile:5208
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 5208: 1Q86_j6_A-U2115_A-U2276_A-U2290_A-C2315_A-G2421_A-G2459

Primary Citation: (from PDB entry 1Q86)

J.L.HANSEN M.T.SCHMEING P.B.MOORE T.A.STEITZ STRUCTURAL INSIGHTS INTO PEPTIDE BOND FORMATION PROC.NAT.ACAD.SCI.USA V. 99 11670 2002

Experimental Method: X-RAY_DIFFRACTION

Structure Images
3d structure of junction secondary structure of junction

Click to launch 3D viewer Jmol | Larger 3D image | Created with Raster3D and RNAView

Derived Information
Type:6-wayCluster:1YIJ j6 0-U2115 0-U2276 0-U2290 0-C2315 0-G2421 0-G2459 
NC-IUBMB Classification:Cluster Page
Angles: 4:31:32:36:36:62:110:140:141:145:150:152:156:171:174°
Fit Criteria: C
Extracted Structure:Download
Minimized Structure:Download RMSD = 0.72877Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain A: GUUUGAC 7nt

Strand 2: Chain A: CUUUAC 6nt

Strand 3: Chain A: GUACGC 6nt

Strand 4: Chain A: GCGCCC 6nt

Strand 5: Chain A: GGUCUAGCGAACCA 14nt

Strand 6: Chain A: UGAUGACAGAAAAG 14nt

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