RNAJunction Database - Junction Profile:4725
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 4725: 1PNY_j3_0-G1323_0-G1351_0-G1617

Primary Citation: (from PDB entry 1PNY)

A.VILA-SANJURJO W.K.RIDGEWAY V.SEYMANER W.ZHANG S.SANTOSO K.YU J.H.D.CATE X-RAY CRYSTAL STRUCTURES OF THE WT AND A HYPER-ACCURATE RIBOSOME FROM ESCHERICHIA COLI PROC.NAT.ACAD.SCI.USA V. 100 8682 2003

Experimental Method: X-RAY_DIFFRACTION

Structure Images
3d structure of junction secondary structure of junction

Click to launch 3D viewer Jmol | Larger 3D image | Created with Raster3D and RNAView

Derived Information
Type:3-wayCluster:1PNY j3 0-G1323 0-G1351 0-G1617 
NC-IUBMB Classification:Cluster Page
Angles: 76:83:154°
Fit Criteria: B
Extracted Structure:Download
Minimized Structure:Download RMSD = 1.10917Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain 0: AGGGAAAGUCGG 12nt

Strand 2: Chain 0: AGGGUUCCU 9nt

Strand 3: Chain 0: CCGUACCG 8nt

Valid XHTML 1.0 Transitional