RNAJunction Database - Junction Profile:4306
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 4306: 1P5O_j2_A-U19_A-G60

Primary Citation: (from PDB entry 1P5O)

P.J.LUKAVSKY I.KIM G.A.OTTO J.D.PUGLISI STRUCTURE OF HCV IRES DOMAIN II DETERMINED BY NMR. NAT.STRUCT.BIOL. V. 10 1033 2003

Experimental Method:

Structure Images
3d structure of junction secondary structure of junction

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Derived Information
Type:Bulge LoopCluster:1P5O j2 A-U19 A-G60 
NC-IUBMB Classification:HS3HS4Cluster Page
Angles: 164°
Fit Criteria: A
Extracted Structure:Download
Minimized Structure:Download RMSD = 1.22484Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain A: GUGUCGUGCA 10nt

Strand 2: Chain A: UGUCUUCAC 9nt

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