RNAJunction Database - Junction Profile:177
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 177: 1DUQ_j2_G-G404_H-G420

Primary Citation: (from PDB entry 1DUQ)

L.-W.HUNG E.L.HOLBROOK S.R.HOLBROOK THE CRYSTAL STRUCTURE OF THE REV BINDING ELEMENT OF HIV-1 REVEALS NOVEL BASE PAIRING AND CONFORMATIONAL VARIABILITY PROC.NAT.ACAD.SCI.USA V. 97 5107 2000

Experimental Method: X-RAY_DIFFRACTION

Structure Images
3d structure of junction secondary structure of junction

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Derived Information
Type:Bulge LoopCluster:1DUQ j2 G-G404 H-G420 
NC-IUBMB Classification:HS4HS6Cluster Page
Angles: 173°
Fit Criteria: A
Extracted Structure:Download
Minimized Structure:Download RMSD = 0.55404Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain G: CUGGGCGCAG 10nt

Strand 2: Chain H: CUGACGGUACAG 12nt

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