RNAJunction Database - Junction Profile:8438
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 8438: 1Y39_j2_C-G109_C-A126

Primary Citation: (from PDB entry 1Y39)

M.S.DUNSTAN D.GUHATHAKURTA D.E.DRAPER G.L.CONN COEVOLUTION OF PROTEIN AND RNA STRUCTURES WITHIN A HIGHLY CONSERVED RIBOSOMAL DOMAIN CHEM.BIOL. V. 12 201 2005

Experimental Method: X-RAY_DIFFRACTION

Structure Images
3d structure of junction secondary structure of junction

Click to launch 3D viewer Jmol | Larger 3D image | Created with Raster3D and RNAView

Derived Information
Type:Bulge LoopCluster:1Y39 j2 D-G309 D-A326 
NC-IUBMB Classification:HS2HS2Cluster Page
Angles: 148°
Fit Criteria: B
Extracted Structure:Download
Minimized Structure:Download RMSD = 0.84133Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain C: AUGUAUGC 8nt

Strand 2: Chain C: GCAAUCAU 8nt

Valid XHTML 1.0 Transitional