RNAJunction Database - Junction Profile:7841
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 7841: 1VS5_j5_A-C569_A-C651_A-G752_A-C811_A-C879

Primary Citation: (from PDB entry 1VS5)

B.S.SCHUWIRTH A.VILA-SANJURJO J.H.D.CATE STRUCTURAL ANALYSIS OF KASUGAMYCIN INHIBITION OF TRANSLATION. NAT.STRUCT.MOL.BIOL. V. 13 879 2006

Experimental Method: X-RAY_DIFFRACTION

Structure Images
3d structure of junction secondary structure of junction

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Derived Information
Type:5-wayCluster:2I2U j5 A-C569 A-C651 A-G752 A-C811 A-C879 
NC-IUBMB Classification:Cluster Page
Angles: 19:56:69:83:94:107:125:147:150:173°
Fit Criteria: B
Extracted Structure:Download
Minimized Structure:Download RMSD = 0.74174Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain A: AGCUUGAG 8nt

Strand 2: Chain A: GGCGUAAAGCGCACGCAGGCGGUU 24nt

Strand 3: Chain A: CUGACGCUCAGGUGCGAAAGC 21nt

Strand 4: Chain A: GCCGUAAACGAUGUC 15nt

Strand 5: Chain A: GACCGCC 7nt

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