RNAJunction Database - Junction Profile:5568
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 5568: 1S1I_j2_3-A247_3-C260

Primary Citation: (from PDB entry 1S1I)

C.M.SPAHN M.G.GOMEZ-LORENZO R.A.GRASSUCCI R.JORGENSEN G.R.ANDERSEN R.BECKMANN P.A.PENCZEK J.P.G.BALLESTA J.FRANK DOMAIN MOVEMENTS OF ELONGATION FACTOR EEF2 AND THE EUKARYOTIC 80S RIBOSOME FACILITATE TRNA TRANSLOCATION. EMBO J. V. 23 1008 2004

Experimental Method: ELECTRON_MICROSCOPY

Structure Images
3d structure of junction secondary structure of junction

Click to launch 3D viewer Jmol | Larger 3D image | Created with Raster3D and RNAView

Derived Information
Type:Bulge LoopCluster:1YI2 j2 0-A247 0-C260 
NC-IUBMB Classification:HS1HS3Cluster Page
Angles: 50°
Fit Criteria: B
Extracted Structure:Download
Minimized Structure:Download RMSD = 0.95111Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain 3: GGCAAUGUG 9nt

Strand 2: Chain 3: CGAAGCC 7nt

Valid XHTML 1.0 Transitional