RNAJunction Database - Junction Profile:4740
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 4740: 1PNY_j5_0-C593_0-A681_0-G822_0-G1209_0-G1263

Primary Citation: (from PDB entry 1PNY)

A.VILA-SANJURJO W.K.RIDGEWAY V.SEYMANER W.ZHANG S.SANTOSO K.YU J.H.D.CATE X-RAY CRYSTAL STRUCTURES OF THE WT AND A HYPER-ACCURATE RIBOSOME FROM ESCHERICHIA COLI PROC.NAT.ACAD.SCI.USA V. 100 8682 2003

Experimental Method: X-RAY_DIFFRACTION

Structure Images
3d structure of junction secondary structure of junction

Click to launch 3D viewer Jmol | Larger 3D image | Created with Raster3D and RNAView

Derived Information
Type:5-wayCluster:1JZZ j5 A-C593 A-A681 A-G822 A-G1209 A-G1263 
NC-IUBMB Classification:Cluster Page
Angles: 58:67:86:90:104:109:110:113:157:163°
Fit Criteria: C
Extracted Structure:Download
Minimized Structure:Download RMSD = 1.1774Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain 0: UAGACU 6nt

Strand 2: Chain 0: GCGACUUA 8nt

Strand 3: Chain 0: AGUUCU 6nt

Strand 4: Chain 0: AGCG 4nt

Strand 5: Chain 0: UGCGGAUGC 9nt

Valid XHTML 1.0 Transitional