RNAJunction Database - Junction Profile:4676
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 4676: 1PNY_j2_0-G1427_0-C1598

Primary Citation: (from PDB entry 1PNY)

A.VILA-SANJURJO W.K.RIDGEWAY V.SEYMANER W.ZHANG S.SANTOSO K.YU J.H.D.CATE X-RAY CRYSTAL STRUCTURES OF THE WT AND A HYPER-ACCURATE RIBOSOME FROM ESCHERICHIA COLI PROC.NAT.ACAD.SCI.USA V. 100 8682 2003

Experimental Method: X-RAY_DIFFRACTION

Structure Images
3d structure of junction secondary structure of junction

Click to launch 3D viewer Jmol | Larger 3D image | Created with Raster3D and RNAView

Derived Information
Type:Bulge LoopCluster:1J5A j2 A-G1427 A-C1598 
NC-IUBMB Classification:HS2HS5Cluster Page
Angles: 52°
Fit Criteria: B
Extracted Structure:Download
Minimized Structure:Download RMSD = 1.17891Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain 0: AACGUUGAAAC 11nt

Strand 2: Chain 0: GUGGAGUG 8nt

Valid XHTML 1.0 Transitional