RNAJunction Database - Junction Profile:4042
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 4042: 1NJO_j6_0-U2057_0-U2222_0-C2237_0-C2260_0-G2363_0-A2404

Primary Citation: (from PDB entry 1NJO)

A.BASHAN I.AGMON R.ZARIVATCH F.SCHLUENZEN J.M.HARMS R.BERISIO H.BARTELS H.A.HANSEN A.YONATH STRUCTURAL BASIS OF THE RIBOSOMAL MACHINERY FOR PEPTIDE BOND FORMATION, TRANSLOCATION, AND NASCENT CHAIN PROGRESSION MOL. CELL V. 11 91 2003

Experimental Method: X-RAY_DIFFRACTION

Structure Images
3d structure of junction secondary structure of junction

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Derived Information
Type:6-wayCluster:1NJP j6 0-U2057 0-U2222 0-C2237 0-C2260 0-G2363 0-A2404 
NC-IUBMB Classification:Cluster Page
Angles: 7:27:38:55:61:61:98:112:117:140:147:148:150:168:174°
Fit Criteria: C
Extracted Structure:Download
Minimized Structure:Download RMSD = 1.48776Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain 0: GUUUGA 6nt

Strand 2: Chain 0: CUUUAC 6nt

Strand 3: Chain 0: UCGC 4nt

Strand 4: Chain 0: GCGCCC 6nt

Strand 5: Chain 0: GGCUUAGUGA 10nt

Strand 6: Chain 0: CAACGGAUAAAAG 13nt

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