RNAJunction Database - Junction Profile:4041
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 4041: 1NJO_j6_0-G44_0-G156_0-A189_0-C208_0-A239_0-C439

Primary Citation: (from PDB entry 1NJO)

A.BASHAN I.AGMON R.ZARIVATCH F.SCHLUENZEN J.M.HARMS R.BERISIO H.BARTELS H.A.HANSEN A.YONATH STRUCTURAL BASIS OF THE RIBOSOMAL MACHINERY FOR PEPTIDE BOND FORMATION, TRANSLOCATION, AND NASCENT CHAIN PROGRESSION MOL. CELL V. 11 91 2003

Experimental Method: X-RAY_DIFFRACTION

Structure Images
3d structure of junction secondary structure of junction

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Derived Information
Type:6-wayCluster:1PNY j6 0-G44 0-G156 0-A189 0-C208 0-A239 0-C439 
NC-IUBMB Classification:Cluster Page
Angles: 20:21:40:56:65:84:85:99:103:119:123:141:158:163:172°
Fit Criteria: C
Extracted Structure:Download
Minimized Structure:Download RMSD = 1.16615Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain 0: GGGAACUC 8nt

Strand 2: Chain 0: AGCC 4nt

Strand 3: Chain 0: GAAGGAGAAGAAAGA 15nt

Strand 4: Chain 0: UCGAUUC 7nt

Strand 5: Chain 0: GAUCAGC 7nt

Strand 6: Chain 0: GCUAAAUACU 10nt

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