RNAJunction Database - Junction Profile:2647
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 2647: 1KOD_j2_A-A7_B-C37

Primary Citation: (from PDB entry 1KOD)

Y.S.YANG M.KOCHOYAN P.BURGSTALLER E.WESTHOF M.FAMULOK STRUCTURAL BASIS OF LIGAND DISCRIMINATION BY TWO RELATED RNA APTAMERS RESOLVED BY NMR SPECTROSCOPY SCIENCE V. 272 1343 1996

Experimental Method:

Structure Images
3d structure of junction secondary structure of junction

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Derived Information
Type:Bulge LoopCluster:1KOC j2 A-A7 B-C37 
NC-IUBMB Classification:2HS2Cluster Page
Angles: 151°
Fit Criteria: B
Extracted Structure:Download
Minimized Structure:Download RMSD = 1.13189Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain A: AGAAGGAG 8nt

Strand 2: Chain B: GUCGCU 6nt

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