RNAJunction Database - Junction Profile:2520
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 2520: 1KC8_j5_A-A2095_A-G2481_A-U2531_A-U2615_A-C2641

Primary Citation: (from PDB entry 1KC8)

J.L.HANSEN N.BAN P.NISSEN P.B.MOORE T.A.STEITZ STRUCTURES OF FIVE ANTIBIOTICS BOUND AT THE PEPTIDYL TRANSFERASE CENTER OF THE LARGE RIBOSOMAL SUBUNIT J.MOL.BIOL. V. 330 1061 2003

Experimental Method: X-RAY_DIFFRACTION

Structure Images
3d structure of junction secondary structure of junction

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Derived Information
Type:5-wayCluster:1Q82 j5 A-A2095 A-G2481 A-U2531 A-U2615 A-C2641 
NC-IUBMB Classification:Cluster Page
Angles: 20:23:28:46:109:128:133:153:155:173°
Fit Criteria: B
Extracted Structure:Download
Minimized Structure:Download RMSD = 0.80625Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain A: AGGGAUAACAGAGU 14nt

Strand 2: Chain A: GGAAGCGAAGACCCU 15nt

Strand 3: Chain A: GCUACCUCGAUGUCGGU 17nt

Strand 4: Chain A: GCUGGGUUUAGAC 13nt

Strand 5: Chain A: GUCGGCUGCUAUCU 14nt

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