RNAJunction Database - Junction Profile:1234
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 1234: 1IBK_j4_A-G944_A-A1236_A-C1296_A-G1334

Primary Citation: (from PDB entry 1IBK)

J.M.OGLE D.E.BRODERSEN W.M.CLEMONS JR. M.J.TARRY A.P.CARTER V.RAMAKRISHNAN RECOGNITION OF COGNATE TRANSFER RNA BY THE 30S RIBOSOMAL SUBUNIT SCIENCE V. 292 897 2001

Experimental Method: X-RAY_DIFFRACTION

Structure Images
3d structure of junction secondary structure of junction

Click to launch 3D viewer Jmol | Larger 3D image | Created with Raster3D and RNAView

Derived Information
Type:4-wayCluster:2J02 j4 A-G944 A-A1236 A-C1296 A-G1334 
NC-IUBMB Classification:Cluster Page
Angles: 33:54:60:64:93:102°
Fit Criteria: C
Extracted Structure:Download
Minimized Structure:Download RMSD = 0.79524Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain A: UACAAUGC 8nt

Strand 2: Chain A: UGGA 4nt

Strand 3: Chain A: GCCCAGUUCG 10nt

Strand 4: Chain A: AGCCGGAA 8nt

Valid XHTML 1.0 Transitional