RNAJunction Database - Junction Profile:11593

Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 11593: 2I2P_j5_A-C58_A-G107_A-A315_A-G337_A-G351

Primary Citation: (from PDB entry 2I2P)

V.BERK W.ZHANG R.D.PAI J.H.D.CATE STRUCTURAL BASIS FOR MRNA AND TRNA POSITIONING ON THE RIBOSOME. PROC.NATL.ACAD.SCI.USA V. 103 15830 2006

Experimental Method: X-RAY_DIFFRACTION

Structure Images
3d structure of junction secondary structure of junction

Click to launch 3D viewer Jmol | Larger 3D image | Created with Raster3D and RNAView

Derived Information
Type:5-wayCluster:1VS5 j5 A-C58 A-G107 A-A315 A-G337 A-G351 
NC-IUBMB Classification:Cluster Page
Angles: 36:66:73:79:108:108:114:117:124:173°
Fit Criteria: A
Extracted Structure:Download
Minimized Structure:Download RMSD = 0.82571Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain A: GCGGACGGGU 10nt

Strand 2: Chain A: UGCAAGU 7nt

Strand 3: Chain A: ACACUG 6nt

Strand 4: Chain A: CAGACU 6nt

Strand 5: Chain A: AGGCAGCA 8nt

Valid XHTML 1.0 Transitional