RNAJunction Database - Junction Profile:10599
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 10599: 2FCZ_j4_A-G7_A-C15_B-G7_B-C15

Primary Citation: (from PDB entry 2FCZ)

E.ENNIFAR J.C.PAILLART R.MARQUET P.DUMAS TARGETING THE DIMERIZATION INITIATION SITE OF HIV-1 RNA WITH AMINOGLYCOSIDES: FROM CRYSTAL TO CELL. NUCLEIC ACIDS RES. V. 34 2328 2006

Experimental Method: X-RAY_DIFFRACTION

Structure Images
3d structure of junction secondary structure of junction

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Derived Information
Type:4-wayCluster:1Y3S j4 A-G7 A-C15 B-G7 B-C15 
NC-IUBMB Classification:Cluster Page
Angles: 9:9:162:165:167:173°
Fit Criteria: C
Extracted Structure:Download
Minimized Structure:Download RMSD = 0.50516Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain A: UGAAGU 6nt

Strand 2: Chain A: ACACA 5nt

Strand 3: Chain B: ACACA 5nt

Strand 4: Chain B: UGAAGU 6nt

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