RNAJunction Database - Junction Profile:10407
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 10407: 2D1B_j2_A-G6_A-A31

Primary Citation: (from PDB entry 2D1B)

S.BABA K.TAKAHASHI S.NOGUCHI H.TAKAKU Y.KOYANAGI N.YAMAMOTO G.KAWAI SOLUTION RNA STRUCTURES OF THE HIV-1 DIMERIZATION INITIATION SITE IN THE KISSING-LOOP AND EXTENDED-DUPLEX DIMERS J.BIOCHEM.(TOKYO) V. 138 583 2005

Experimental Method: NMR

Structure Images
3d structure of junction secondary structure of junction

Click to launch 3D viewer Jmol | Larger 3D image | Created with Raster3D and RNAView

Derived Information
Type:Bulge LoopCluster:2D1A j2 A-A31 B-G6 
NC-IUBMB Classification:2HS2Cluster Page
Angles: 163°
Fit Criteria: B
Extracted Structure:Download
Minimized Structure:Download RMSD = 0.50438Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain A: AGAGGCGA 8nt

Strand 2: Chain A: UCGGCU 6nt

Valid XHTML 1.0 Transitional